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Registros recuperados: 136
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Investigation of a hepatitis A outbreak due to oyster consumption in France in 2007 ArchiMer
Guillois-bécel, Y.; Couturier, E.; Le Saux, Jean-claude; Roque-afonso, A.m.; Le Guyader, Soizick; Le Goas, A.; Pernes, J.; Le Bechec, S.; Briand, A.; Robert, C.; Dussaix, E.; Pommepuy, Monique; Vaillant, C..
Following the notification of nine hepatitis A cases partly clustered near an oyster growing area in the Côtes d’Armor district (Brittany, France), epidemiological, environmental and microbiological investigations were performed in order to identify the source and vehicle of contamination and devise control measures. The investigations identified 111 cases, all of whom lived or had stayed in the district. Of these cases, 87% had eaten raw bivalve molluscs and 81% had specifically eaten oysters. The raw molluscs originated from a single shellfish farm located at the north of Paimpol bay. The shellfish were probably contaminated while being stored in submersible tanks or purified in a land-based tank. They were tainted either by sewage overflows or releases...
Tipo: Text Palavras-chave: Hepatitis A; Outbreak; Oysters; Epidemiological investigations; Traceback investigations.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00066/17750/15272.pdf
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Is the Portuguese oyster Crassostrea angulata in Southern Europe endangered by the expansion of the Pacific oyster C. gigas? ArchiMer
Batista, Frederico; Boudry, Pierre; Lapegue, Sylvie; Heurtebise, Serge; Monteiro, C. C..
The Portuguese oyster, Crassostrea angulata, was introduced from Portugal to the French Atlantic Coast in the 1860s. C. angulata quickly settled and expanded and leaded to the development of a new aquacultural industry in France. In the late 1960s, mortality associated with the detection of an iridovirus, led to the wipe out of C. angulata from French Atlantic waters and to the massive introduction of C. gigas to sustain production. In Southern Europe, similar symptoms were also observed in natural stocks of C. angulata from Sado River (Portugal) and from the area of Cadiz (Spain). Nowadays, only very few «pure» populations of C. angulata remain in southern Europe. These populations are potentially endangered by the current expansion of C. gigas...
Tipo: Text Palavras-chave: Selection; Hybridization; Settlement pattern; Population genetic; Genetic; Oysters; Crassostrea angulata; Crassostrea gigas.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/acte-3310.pdf
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Juvenile oyster disease (JOD) in American oysters, Crassostrea virginica, reared in France. Detection of abnormal calcium deposits in gill and mantle tissues ArchiMer
Renault, Tristan; Cochennec, Nathalie; Chollet, Bruno; Maffart, Patricia.
Progeny of Crassostrea virginica oysters, introduced into France in 1992, were reared during 1992 and 1993, to test their growth performances. These assays were performed to investigate the possible replacement of Crassostrea gigas with a non indigenous species, Crassostrea virginica. During the summer of 1993, sporadic mass mortalities (80-90%) occurred among young, Crassastrea virginica, oysters reared in the IFREMER nursery in La Tremblade (Charente Maritime).
Tipo: Text Palavras-chave: Histology; Crassostrea virginica; Mortality; Oysters.
Ano: 1995 URL: http://archimer.ifremer.fr/doc/1995/acte-2975.pdf
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La Reproduction naturelle et contrôlée des bivalves cultivés en France. -Rapport de Groupe de Travail- IFREMER/Nantes/France, 14 et 15 novembre 1995 ArchiMer
Devauchelle, Nicole; Barret, Jean; Salaun, Gilles.
This report compiles 17 short and illustrated syntheses concerning the natural strategies of reproduction and the artificial control of the reproductive process for the flat oyster, Ostrea edulis, the japanese oyster, Crassostrea gigas, the mussels, Mytilus edulis and My ti/us galloprovincialis, the scallop, Pecten maximus. An additional syntheses is presented, as a comparison within molluscs, which are the main research topics at IFREMER concerning the artificial control of the reproductive processes in Marine Fish. Three main subjects are documented : 1. the ecophysiology of the natural period of reproduction in the wild, 2. the methods developed in the hatcheries for the artificial control of the reproductive periods, the gametes collection and the...
Tipo: Text Palavras-chave: Bivalves; Stratégie de reproduction; Contrôle artificiel; Gonades; Gamètes; Coquille St Jacques; Moules; Huîtres; Nourriture; Photopériode; Température; Biologie; Physiologie; Biochimie.; Bivalves; Reproductive strategy; Artificial induction of reproduction; Gonads; Gametes; Scallop; Mussels; Oysters; Food; Light; Temperature; Biology; Physiology; Biochemistry..
Ano: 1997 URL: http://archimer.ifremer.fr/doc/00043/15441/12811.pdf
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Les activités de production - conchyliculture ArchiMer
Deschamps, Gerard; Miossec, Dominique; Pannier, Thierry; Huet, Jerome; Lorance, Pascal.
These studies of halieutic ecology produced at the request of Electricité de France by the French Institute of Research for Exploitation of the Sea in the Normand Breton Gulf must constitute one of the elements making it possible to come to a conclusion or not on the feasibility of the tidal power plant construction project; these studies have three parts: The first part discusses halieutic zooplankton. In the first place, the main species that constitute the exploitable living resources are considered, observed from the first stages of their life, in the egg or at different larval stages preceding the juvenile state. Also of interest are certain holoplanktonic groups. The whole of these observations establishes the status of zooplanktonic populations...
Tipo: Text Palavras-chave: Whelk; Mussels; Oysters; Shellfish farming; Professional fishing; Holoplankton; Zooplankton; France; Conchyliculture; Buccin; Pêche professionnelle; Usine marémotrice; Zooplancton; Holoplancton; Ecologie Halieutique.
Ano: 1986 URL: http://archimer.ifremer.fr/doc/1986/rapport-2333.pdf
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Maastrichtian and Danian species of Turkostreini (Ostreidae, Crassostreinae) from the Neuquén Basin, Argentina Ameghiniana
Griffin,Miguel; Casadío,Silvio; Parras,Ana.
The record of Turkostrea damboreneae nom. nov. and Cubitostrea primordialis n. sp. in the Maastrichtian Jagüel and Roca Formations and of Turkostrea argentina n. sp., in the Danian beds of the Roca Formation reveals that the two genera involved have a history that reaches back into the Late Cretaceous in northern Patagonia. Turkostrea damboreneae nom. nov. and Cubitostrea primordialis n. sp. are the two oldest representatives of the genera in which they belong. The two species of Turkostrea show clear affinities with other species of this genus that thrived in the Paleogene of the Northern Hemisphere. Cubitostrea primordialis n. sp. is closely allied to the previously known Paleocene species common in the region. While Turkostrea appears to have survived...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Oysters; Systematics; Cretaceous-Paleogene boundary; Neuquén Basin; Argentina.
Ano: 2005 URL: http://www.scielo.org.ar/scielo.php?script=sci_arttext&pid=S0002-70142005000200001
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Management of oyster and mussel culture ArchiMer
Heral, Maurice; Drinkwaard, A.; Bohle, B.; Figueras, Antonio; Lavoie, R.; Maurer, Daniele.
The world aquaculture production (fresh and marine waters) achieved 11.1 million tonnes in 1986 (FAO, 1989). The molluscs represented 21 % of the total production. Marine aquaculture with 5.45 million tonnes reached 49% of the total production. The marine cultivated mollusc production was 2.25 million tonnes due mainly to oysters (36%), mussels (34%), clams (16%), and scallops (6%). As the aquaculture production is clearly identified in the statistics only since 1984, the evolution of the production of oysters and mussels for the last 15 years has been analyzed with the FAO data for the total catch (fisheries and culture). By comparison of the two statistics for the same year (1986), the fisheries represented only 17% for oysters and 16% for mussels. Fig....
Tipo: Text Palavras-chave: Culture; Mussels; Oysters; Panel report.
Ano: 1990 URL: http://archimer.ifremer.fr/doc/1990/publication-3020.pdf
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Mass mortalities of oysters (Crassostrea gigas) during spring 1988 in the Bay of Marennes-Oleron, related to environmental conditions ArchiMer
Bodoy, Alain; Garnier, Jacqueline; Razet, Daniel; Geairon, Philippe.
Mass mortalities of oysters were recorded in the South of the Bay of Marennes-Oleron, during spring 1988. The percentages of mortality averaged 50 % and reached up to 90 % in some areas of bottom culture. The losses were estimated to 7 800 tonnes. This paper present the results of the investigations carried out in several fields. Among them, pathological examination revealed that no pathogenic agent or parasitic infestation could be evoked to explain these mortalities. Analyses of pollutants were either negatives, or the concentrations were far below the toxicity levels. Climatological and hydrological observations showed that rainfalls were twice more abundant then the average, for a period of 6 months preceding the mortalities. The salinity was low and...
Tipo: Text Palavras-chave: Bay of Marennes Oleron; Crassostrea gigas; Oysters; Mortalities.
Ano: 1990 URL: http://archimer.ifremer.fr/doc/1990/acte-3030.pdf
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Metabolic adjustments in the oyster Crassostrea gigas according to oxygen level and temperature ArchiMer
Le Moullac, Gilles; Queau, Isabelle; Le Souchu, Pierrick; Pouvreau, Stephane; Moal, Jeanne; Le Coz, Jean-rene; Samain, Jean-francois.
The purpose of this study was to examine the responses of the oyster C. gigas to oxygen levels at subcellular and whole-organism levels. Two experiments were carried out. The first experiment was designed to measure at 15°C, 20°C and 25°C for 20 hours the clearance (CR) and oxygen consumption (OC) rates of oysters exposed at different concentrations of oxygen. The goal of this first part was to estimate the hypoxic threshold for oysters below which their metabolism shifts toward anaerobiosis, by estimating the oxygen critical point (PcO2) at 15, 20 and 25°C. The second experiment was carried out to evaluate the metabolic adaptations to hypoxia for 20 days at three temperatures: 12°C, 15°C and 20°C. The metabolic pathways were characterized by the...
Tipo: Text Palavras-chave: Succinate; Alanine; Phosphoenolpyruvate carboxykinase; Pyruvate kinase; Temperature; Hypoxia; Oysters.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-2693.pdf
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Métabolisme de l'huître Crassostrea gigas stockée dans des dégorgeoirs conchylicoles, à différentes densités et saisons ArchiMer
Bougrier, Serge; Masson, Daniel; Geairon, Philippe; Fouche, Dominique; Leroy, Anne; Faury, Nicole; Ratiskol, Jacqueline.
One of the problems faced by oyster farmers in France is the immediate or delayed mortality of oysters in the storage tanks prior to shipping. This may be due to overstocking and/or improper water management. To investigate the problem, experiments were performed in commercial storage tanks stocked with oysters at different densities. The aim of this study was to provide some basic experimental data and guidelines for better handling of oysters prior to shipping
Tipo: Text Palavras-chave: Physiology; Oyster farmers; Crassostrea gigas; Oysters; Storage tanks; Physiologie; Ostréiculture; Dégorgeoirs; Crassostrea gigas; Huîtres; Bassin stockage.
Ano: 1991 URL: http://archimer.ifremer.fr/doc/1991/acte-3047.pdf
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Metagenomic to evaluate norovirus genomic diversity in oysters: Impact on hexamer selection and targeted capture-based enrichment ArchiMer
Strubbia, Sofia; Schaeffer, Julien; Besnard, Alban; Wacrenier, Candice; Le Mennec, Cecile; Garry, Pascal; Desdouits, Marion; Le Guyader, Soizick.
Human virus transmission through food consumption has been identified since many years and the international trade increases the risk of dissemination of viral pathogens. The development of metagenomic approach holds many promises for the surveillance of viruses in food and water. This work aimed to analyze norovirus diversity and to evaluate strain-dependent accumulation patterns in three oyster types by using a metagenomic approach. Different hexamer sets to prime cDNA were evaluated before capture-based approach to enhance virus reads recovery during deep sequencing. The study includes the use of technical replicates of artificially contaminated oysters and the analysis of multiple negatives controls. Results showed a clear impact of the hexamer set...
Tipo: Text Palavras-chave: Norovirus; Oysters; Metagenomic; Human enteric viruses..
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00614/72575/71535.pdf
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Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and Related Bioaccumulated Oysters ArchiMer
Strubbia, Sofia; Schaeffer, Julien; Oude Munnink, Bas B.; Besnard, Alban; Phan, My V. T.; Nieuwenhuijse, David F.; De Graaf, Miranda; Schapendonk, Claudia M. E.; Wacrenier, Candice; Cotten, Matthew; Koopmans, Marion P. G.; Le Guyader, Soizick.
Metagenomic sequencing is a promising method to determine the virus diversity in environmental samples such as sewage or shellfish. However, to identify the short RNA genomes of human enteric viruses among the large diversity of nucleic acids present in such complex matrices, method optimization is still needed. This work presents methodological developments focused on norovirus, a small ssRNA non-enveloped virus known as the major cause of human gastroenteritis worldwide and frequently present in human excreta and sewage. Different elution protocols were applied and Illumina MiSeq technology were used to study norovirus diversity. A double approach, agnostic deep sequencing and a capture-based approach (VirCapSeq-VERT) was used to identify norovirus in...
Tipo: Text Palavras-chave: Norovirus; Sewage; Oysters; Metagenomic sequencing; Metavirome.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00586/69765/67656.pdf
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Microbiological quality of oysters (Crassostrea gigas) produced and commercialized in the coastal region of Florianópolis - Brazil BJM
Pereira,Murilo Anderson; Nunes,Márcia Menezes; Nuernberg,Leonardo; Schulz,Denys; Batista,Cleide Rosana Vieira.
Oysters are filter feeders able to ingest particles in suspension that may carry pathogenic microorganisms. In this respect, the consumption of raw oysters can cause foodborne diseases in humans. The aim of the present study was to evaluate the microbiological quality of Crassostrea gigas oysters cultivated and commercialized in the coastal region of Florianópolis, SC, Brazil. The study comprised counts of coliforms at 35ºC and at 45ºC, Escherichia coli and coagulase-positive staphylococci, and detection of Salmonella sp, Vibrio cholerae and Vibrio parahaemolyticus. Ninety samples were analyzed, 45 of them collected at seafood commercial establishments and the other 45 were collected in the cultivation area. All analyses were performed according to methods...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Coliforms; Escherichia coli; Food; Microbiological quality; Oysters.
Ano: 2006 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822006000200012
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Microbiologie et coquillages : des enjeux et des développements futurs ArchiMer
Le Guyader, Soizick; Garry, Pascal; Ollivier, Joanna; Piquet, Jean-come.
The shellfish safety has long been considered a public health problem. The implementation of a regulation based on a bacterial indicator of faecal contamination has significantly reduced outbreaks of bacterial origin. However, epidemics of viral gastroenteritis due to the presence of noroviruses from human sewage persist. We demonstrated few years ago that oysters are not just a passive filter but are able to select some viral strains, via the presence of specific ligands, very similar to ligands observed in humans for these same virus. Ongoing developments, in conjunction with the application of metagenomic tools, will allow us to better understand the fate of some human pathogens after their release into the coastal environment.
Tipo: Text Palavras-chave: Shellfish; Microbiology; Oysters; Norovirus.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00599/71141/69457.pdf
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Modèle énergétique uniboite de la croissance des huîtres (Crassostrea gigas) dans le bassin de Marennes-Oléron ArchiMer
Bacher, Cedric; Heral, Maurice; Deslous-paoli, Jean-marc; Razet, Daniel.
The growth of oysters (Crassostrea gigas) is modeled in order to study the trophic capacity of the Bay of Marennes Oléron. Total seston and amount of protids, lipids, and carbohydrates converted to energy are the environmental factors taken into account. Time series of these variables are derived during 2 yr with a daily time step from a linear regression including the tidal velocity, the height of the water column, and the wind velocity. A model of the energetic budget based on assimilation and respiration terms and depending on the previous time series is run to simulate the individual growth of an oyster. The knowledge of the number of oysters, the flow of water entering the bay, and the volume of the bay allows us then to estimate that 7% of the...
Tipo: Text Palavras-chave: Marennes Oléron; Crassostrea gigas; Huîtres; Croissance; Modélisation; Marennes Oleron bay; Crassostrea gigas; Oysters; Growth; Modelisation.
Ano: 1991 URL: http://archimer.ifremer.fr/doc/1991/publication-3051.pdf
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Modelisation of oyster shell growth at 3 stations in the Patuxent river (Chesapeake Bay) ArchiMer
Prou, Jean; Goulletquer, Philippe; Bacher, Cedric.
In oyster production area the determination of the stock, estimation of mortality and growth rates are determinant for knowledge of the fishery. Growth models can be used to predict the time to reach marketable size (76 mm in Chesapeake Bay). They are also important in term of management, when they can predict the future value of the stock (Askew, 1978). Oyster growth models can be built by analysing growth of natural oysters but absolute age is orten unknown. Many authors report growth data in Chesapeake Bay for suspended oyster culture. Unfortunalely, modelisation of the growth was not developed. In that study oyster, shell growth models have been established at three stations in the Patuxent river. Seasonal eITects on growth were integrated in the model
Tipo: Text Palavras-chave: Modelisation; Oysters; Crassostrea virginica; Growth; Chesapeake Bay.
Ano: 1991 URL: http://archimer.ifremer.fr/doc/00200/31109/29512.pdf
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Modelling nitrogen, primary production and oxygen in a Mediterranean lagoon. Impact of oysters farming and inputs from the watershed ArchiMer
Chapelle, Annie; Menesguen, Alain; Deslous-paoli, Jean-marc; Souchu, Philippe; Mazouni, Nabila; Vaquer, André; Millet, Bertrand.
An ecosystem model based on nitrogen cycling and oxygen has been developed for the Thau lagoon. It takes into account the specific features of this Mediterranean lagoon, a semi-confined system with watershed inputs and oyster farming. The ecosystem model uses currents calculated by a two-dimensional hydrodynamic model and integrated into a box model. This model is compared with a year survey data and used to estimate nitrogen and oxygen fluxes between the different ecosystem compartments. The yearly simulation shows that the ecosystem behavior is driven by meteorological forcing, especially rain which causes watershed inputs. These inputs trigger microphytoplankton growth, which is responsible for new primary production. During dry periods, nitrogen is...
Tipo: Text Palavras-chave: Oxygen; Nitrogen; Oysters; Primary production; Box model; Lagoon ecosystem.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/2000/publication-725.pdf
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Molecular identification, phylogeny and geographic distribution of Brazilian mangrove oysters (Crassostrea) Genet. Mol. Biol.
Melo,Aline Grasielle Costa de; Varela,Eduardo Sousa; Beasley,Colin Robert; Schneider,Horacio; Sampaio,Iracilda; Gaffney,Patrick Michael; Reece,Kimberly S.; Tagliaro,Claudia Helena.
Oysters (Ostreidae) manifest a high degree of phenotypic plasticity, whereby morphology is of limited value for species identification and taxonomy. By using molecular data, the aim was to genetically characterize the species of Crassostrea occurring along the Brazilian coast, and phylogenetically relate these to other Crassostrea from different parts of the world. Sequencing of the partial cytochrome oxidase c subunit I gene (COI), revealed a total of three species of Crassostrea at 16 locations along the Brazilian coast. C. gasar was found from Curuçá (Pará state) to Santos (São Paulo state), and C. rhizophorae from Fortim (Ceará state) to Florianópolis (Santa Catarina state), although small individuals of the latter species were also found at Ajuruteua...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Genetic identification; Oysters; Biogeography; COI gene; Ostreidae.
Ano: 2010 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572010000300030
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Molecular markers as a tool to study genetic resources in oysters ArchiMer
Boudry, Pierre.
Despite the world economic importance of oyster farming, genetic improvement has not yet had a great impact on these species. Oyster farming is traditionnally based on wild stocks, whose natural populations are often overexploited, and frequently does not fulfil market demande....
Tipo: Text Palavras-chave: Molecular markers; Genetic resources; Oysters.
Ano: 1999 URL: http://archimer.ifremer.fr/doc/1999/acte-3212.pdf
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Morphological and mitochondrial DNA characteristics of two cultured species of cupped-oysters (Bivalvia : Ostreidae) in Hong Kong : towards a significant taxonomic name change ArchiMer
Lam, Katherine; Morton, Brian; Boudry, Pierre; Heurtebise, Serge.
Cultured cupped-oysters species in Hong Kong have rarely been differentiated properly due to similarities in shell characters. This study attempted to characterize putative Crassostrea gigas and Crassostrea ariakensis by morphological and genetic means. Allometric ratios of shell height/length and depth/length were significantly different between the two species. Restriction fragment length polymorphism (RFLP) of a PCR amplified mitochondrial COI (cytochrome oxidase I) fragment was used to examine genetic differentiation between putative C. gigas from Hong Kong and previously studied populations of Crassostrea from Europe, Japan and Taiwan. The two Hong Kong species are not only morphologically, but also genetically different from each other in terms of...
Tipo: Text Palavras-chave: Oysters; Hong Kong Crassostrea; Characteristics; Genetic population; Crassostrea ariakensis; Crassostrea gigas.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/2003/acte-2844.pdf
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